生理学信息深度学习:下一代PBPK建模的多尺度框架
📄 中文摘要
生理基础药代动力学(PBPK)建模是模型指导药物开发(MIDD)的基石,为预测药物的吸收、分布、代谢和排泄(ADME)提供了机制框架。然而,其广泛应用受到大规模模拟的高计算成本、复杂生物系统参数识别的困难以及物种间外推的不确定性等因素的制约。研究提出了一种统一的科学机器学习(SciML)框架,旨在结合机制的严谨性与数据驱动的灵活性。该框架的三项主要贡献包括:1)基础PBPK变换器,将药代动力学预测视为序列建模任务;2)生理约束深度学习模型,增强了模型的生理学一致性;3)多尺度建模策略,提升了模型在不同生物层次上的适用性。
📄 English Summary
Physiologically Informed Deep Learning: A Multi-Scale Framework for Next-Generation PBPK Modeling
Physiologically Based Pharmacokinetic (PBPK) modeling serves as a cornerstone of model-informed drug development (MIDD), offering a mechanistic framework for predicting drug absorption, distribution, metabolism, and excretion (ADME). Despite its advantages, the widespread adoption of PBPK modeling faces challenges such as high computational costs for large-scale simulations, difficulties in parameter identification for complex biological systems, and uncertainties in interspecies extrapolation. A unified Scientific Machine Learning (SciML) framework is proposed to bridge the gap between mechanistic rigor and data-driven flexibility. Key contributions include: (1) Foundation PBPK Transformers that frame pharmacokinetic forecasting as a sequence modeling task; (2) Physiologically Constrained Deep Learning models that enhance physiological consistency; and (3) Multi-scale modeling strategies that improve model applicability across different biological levels.
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数据源: OpenAI, Google AI, DeepMind, AWS ML Blog, HuggingFace 等